Reaction-diffusion network systems

rdsys(
  network,
  volume,
  D,
  bath,
  T,
  tau,
  boundaries = default_boundaries(),
  species_source = NULL
)

Arguments

network

an instance of the bondr::network class

volume

an instance of the spurcore::volume class

D

vector of diffusion coefficients for each species in the order returned by species(rdsys)

bath

vector of initial bath particle densities in the order returned by species(rdsys)

T

simulation length

tau

simulation step size

boundaries

a list of boundary objects (default all reflective)

species_source

an instance of the species_source class

Value

rdsys instance