Stochastic simulation algorithm solver

Generates a realization of the solution to the Chemical Master Equation.

ssa(
  sys,
  length.out = 100,
  all.out = FALSE,
  trajectories = 1,
  parallel = FALSE,
  cores = detectCores(),
  average = FALSE,
  k = NULL,
  force_compile = FALSE
)

Arguments

sys	rsys instance
length.out	length of solution output (table rows) (default 100)
all.out	if TRUE (default FALSE), ignore length.out and return entire solution
trajectories	number of trajectories to generate
parallel	if TRUE (default FALSE) generate trajectories using multiple CPU cores
cores	number of cores to use if parallel is TRUE (default is all system cores)
average	if TRUE (default FALSE) and generating multiple trajectories, averages trajectories at sample times; incompatible with all.out = TRUE
k	numeric vector of reaction rates corresponding to the reactions in sys, overrides those contained if sys if provided
force_compile	if set to TRUE, forces the overwriting and recompilation of the network source file

Value

rsol instance